PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe2G424400.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family LBD
Protein Properties Length: 367aa    MW: 41499 Da    PI: 7.6938
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe2G424400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26025.24.4e-0850140898
             DUF260   8 lrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                        +rrk ++d v++p  p    +++++v    G ++v kl ++  ++ee +++++slv+e++++++dP+ G +  ++++  + ++lk e ++l+
  Aqcoe2G424400.1.p  50 QRRKINNDNVVRPENPPYL-REYEAVVSKLGKEKVEKLRSSFnSTEECSKVIDSLVWEGQCWLKDPIGGPYVKYKEICAKSNKLKFENKELE 140
                        7777788888888855554.5666666667********9999456669**********************9888888777777776665544 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031951.7E-450136IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MLRKRIHMNK VQKDANEAEV NNIVNLNHTD EQGYNAFAER NIINQVTDAQ RRKINNDNVV  60
RPENPPYLRE YEAVVSKLGK EKVEKLRSSF NSTEECSKVI DSLVWEGQCW LKDPIGGPYV  120
KYKEICAKSN KLKFENKELE AENKKLKFRM LKLRDEIKLL KTERNDVTGN NHGVGVGLGD  180
GGNDNGRQSY NATANTDIGI RDDVGGDGRF RHTLRNNTKR IVGDGLLNNQ KDVSTDAQTQ  240
KNYVTPPIMQ PQHAQTHNVS LHARQSSQYS VSDDPPYWGY FDYDGTGGHL YALPKTTQSS  300
QYLVSDPQYW GGDGSRHERT NTSHSSQHPS PPKYPTLDLI SQLDRKVDWR TSLGAIEDHD  360
TECPSV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.17e-08LOB domain-containing protein 2